How did you have the mix arranged before?

Meaning, how many tracks of guitar, and what kind of processing to them?

Two tracks per guitar, both run through Poulin VST amps and LeCab with Catharsis IRs (EDIT: I should note each track uses different impulses, it helps to fill out the Poulin tones), both run through ReaEQ (though the rhythm was EQd more in the middle and a little bit to the bass end and the lead is scooped mids with a bit more high end), both using The Glue for compression but set up differently (I'd have to go back and check).

The rhythm had a brighter reverb on it, the lead is rather dry but has a tiny bit of a room reverb on it.

Rhythm tracks were panned to the right (I usually do one to ~ 17% and one to ~ 35%) and leads to the left.

Bass is similar, Poulin XTC and LeCab, it has a hi-pass on it with just a tiny bit of lows rolled off, The Glue compressor and a tiny tiny bit of 'verb. It has two tracks one pretty close to the center and one off to the left a bit under the high-end of the lead.

Yeah I have no idea what I am doing, wanna fight about it?

New mix with the bass playing the rhythm guitar part.

http://soundcloud.com/devin-currie/let-me-go-no-vox

Edit: I haven't redone the fadeouts yet.

I like that fuzztone. Is it a vst or a box?

The bass sounds weird to me. The mix sounds much better this way, but it almost sounds like the bass might be out of tune wif the geetars in certain spots? Is the intonation on that boomstick sound?

And/Or did you record wif a tuning before each take?

Everything is tuned Same bass I usually use, it could probably use a hell of a setup though.

It's also not the final bassline, I am going to rearrange the part under the drawn out chord. Just switching a couple of notes around but I think it will make a pretty big difference.

Hmm, my head may be out of tune then.

I wouldn't doubt an intonation issue. I might give the bass a setup sometime soon.